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博斯拉布后院微生物群

博斯拉布后院微生物群

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Business,Biology,Public Health,Earth Science Classification

数据结构 ? 5882.36M

    Data Structure ?

    * 以上分析是由系统提取分析形成的结果,具体实际数据为准。

    README.md

    Context The soil in composed of thousands of different species, mostly bacteria. Through citizen science we collect samples from different locations around Somerville, MA, run protocols to extract soil-organism dna, and then send samples for sequencing. Content This data repository is the raw structure and files (i believe) received from the company that ran the sequencing. [TODO - who's the vendor?] **analysisfiles/** includes the "results" of the composition of bacteria in each sample ('L1', 'L2', 'L3', 'L4', 'M1', 'M2', 'SH3', 'SH4', 'SH5','SH6') by hierarchy (['genus', 'kingdom', 'class', 'order', 'unknown', 'phylum', 'family', 'identity', 'species']) **pipeline/** I don't know (the secondary data needed to process the raw reads into known/species breakdowns?) **fasta-qual-mapping-files/** I don't know (the raw reads in another format?) **root/*.fastq** I don't know (the raw reads for all samples?) notes: many .txt files are tab-separated-files: each .txt has an txt.xlsx formatted copy, designed for easy browsing Acknowledgements Data collection by: Mrina Nikrad, Dennis Oleksyuk, Raphael Laurenceau Our Lab website: https://www.boslab.org/ Inspiration
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